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Simple 3D imaging of biogenic silica structures by fluorescence microscopy. Version 2.
(Station Biologique de Roscoff, Roscoff, France, 2018)
This protocol describes how to prepare, stain and mount biogenic silica particles (opaline from diatoms, Radiolaria, sponges spicules, phytolith...) for 3D imaging with fluorescence microscopy. The protocol is fast, ...
Earth Microbiome Project (EMP) high throughput (HTP) DNA extraction protocol. Version 07112018.
(University of California, San Diego, San Diego, CA, 2018)
This protocol accompanies the following publication: Marotz, Clarisse, et al. "DNA extraction for streamlined metagenomics of diverse environmental samples." BioTechniques 62.6 (2017):290-293
Scanning Electron Microscopy imaging for Opaline Silica Single Cell Skeletons (Polycystines Radiolaria). Version 3.
(Station Biologique de Roscoff, Roscoff, France, 2018)
Protocol adapted from:
Biard, T., Pillet, L., Decelle, J., Poirier, C., Suzuki, N. and Not, F. (2015) Towards an Integrative Morpho-molecular Classification of the Collodaria (Polycystinea, Radiolaria). Protist 166, ...
Confocal Microscopy imaging for Opaline Silica Single Cell Skeletons (Polycystines Radiolaria).
(Station Biologique de Roscoff, Roscoff, France, 2018)
Single cell rDNA amplification of Nassellaria (Radiolaria).
(Station Biologique de Roscoff, Roscoff, France, 2018)
EMP Sample Submission Guide.
(NOAA Fisheries Southwest Fisheries Research Center, La Jolla,CA, 2018)
This protocol was designed for collaborators with the Earth Microbiome Project to contribute samples in a standardized fashion. Raw, frozen samples are submitted in individually labeled tubes, 10 aliquots (identical ...
BBI: an R package for the computation of Benthic Biotic Indices from composition data.
(2018)
The monitoring of impacts of anthropic activities in marine environments, such as aquaculture, oil-drilling platforms or deep-sea mining, relies on Benthic Biotic Indices (BBI). Several indices have been formalised to ...