dc.contributor.author | Ponsero, Alise J. | |
dc.contributor.author | Bomhoff, Matthew | |
dc.contributor.author | Blumberg, Kai | |
dc.contributor.author | Youens-Clark, Ken | |
dc.contributor.author | Herz, Nina M. | |
dc.contributor.author | Wood-Charlson, Elisha M. | |
dc.contributor.author | Delong, Edward F. | |
dc.contributor.author | Hurwitz, Bonnie L. | |
dc.date.accessioned | 2020-11-26T00:02:07Z | |
dc.date.available | 2020-11-26T00:02:07Z | |
dc.date.issued | 2020 | |
dc.identifier.citation | Ponsero, A.J.; Bomhoff, M.; Blumberg, K.; Youens-Clark,K.; Herz, N.M. et al (2020) Planet Microbe: a platform for marine microbiology to discover and analyze interconnected ‘omics and environmental data. Nucleic Acids Research,1: gkaa637, 11pp. DOI: https://doi.org/10.1093/nar/gkaa637 | en_US |
dc.identifier.uri | http://hdl.handle.net/11329/1459 | |
dc.identifier.uri | http://dx.doi.org/10.25607/OBP-961 | |
dc.description.abstract | In recent years, large-scale oceanic sequencing efforts
have provided a deeper understanding of marine
microbial communities and their dynamics.
These research endeavors require the acquisition
of complex and varied datasets through large, interdisciplinary
and collaborative efforts. However,
no unifying framework currently exists for the marine
science community to integrate sequencing data
with physical, geological, and geochemical datasets.
Planet Microbe is a web-based platform that enables
data discovery from curated historical and ongoing
oceanographic sequencing efforts. In Planet
Microbe, each ‘omics sample is linked with other
biological and physiochemical measurements collected
for the same water samples or during the same
sample collection event, to provide a broader environmental
context. This work highlights the need
for curated aggregation efforts that can enable new
insights into high-quality metagenomic datasets.
Planet Microbe is freely accessible fromhttps://www.
planetmicrobe.org/. | en_US |
dc.language.iso | en | en_US |
dc.rights | Attribution 4.0 International | * |
dc.rights.uri | http://creativecommons.org/licenses/by/4.0/ | * |
dc.subject.other | Omics | en_US |
dc.subject.other | Metagenomics | en_US |
dc.subject.other | Microbiology | en_US |
dc.title | Planet Microbe: a platform for marine microbiology to discover and analyze interconnected ‘omics and environmental data. | en_US |
dc.type | Journal Contribution | en_US |
dc.description.refereed | Refereed | en_US |
dc.format.pagerange | 11pp | en_US |
dc.identifier.doi | 10.1093/nar/gkaa637 | |
dc.subject.parameterDiscipline | Parameter Discipline::Biological oceanography::Bacteria and viruses | en_US |
dc.subject.dmProcesses | Data Management Practices::Data aggregation | en_US |
dc.subject.dmProcesses | Data Management Practices::Data archival/stewardship/curation | en_US |
dc.bibliographicCitation.title | Nucleic Acids Research | en_US |
dc.bibliographicCitation.volume | 1 | en_US |
dc.bibliographicCitation.issue | Article gkaa637 | en_US |
dc.description.sdg | 14.A | en_US |
dc.description.maturitylevel | TRL 9 Actual system "mission proven" through successful mission operations (ground or space) | en_US |
dc.description.bptype | Best Practice | en_US |
dc.description.bptype | Manual (incl. handbook, guide, cookbook etc) | en_US |
obps.contact.contactemail | bhurwitz@email.arizona.edu | |
obps.resourceurl.publisher | https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gkaa637/5879428 | en_US |